Mapping QC

Column

Global mapping statistics

Total_Pairs 174732758 100%
Total_Pairs_Mapped 171934385 98.4%
Total_Uniq_Mapped 161627534 92.5%
Total_Mito_Mapped 4383154 2.5%
Total_Dups 54041122 30.9%
Total_Pairs_MAPQ30 157385805 90.1%
Total_Mito_MAPQ30 3493930 2%
Total_Dups_MAPQ30 49368041 28.3%

Column

Mapping statistics for cell barcodes

Estimated # of cells 2562
Fraction of MAPQ30 in cells 63.6%
Library Complexity (non redudant fraction) 72.4%

Cell barcodes QC

Row

TSS enrichment score profile

Overlapping with sequence annotated regions

Overlapping statistics

Fraction in peaks 62.3%
Fraction in mitocondrial chromosome 1.4%
Fraction in promoters 32.7%
Fraction in Enhancers(ENCODE) 26.1%
Fraction in TSS 29.6%

Row

Distribution of fragments

Total fragments VS fraction in peaks

Distribution of Insert Size

Downstream Analysis

Column

Clustering

Total reads per cell

Column

Motif Analysis

Column

Footprinting Analysis: Comparing two clusters

An example